SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900196
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr3:46926488-46991133
Size: 64645
Super-enhancer rank 196
Number of SE elements: 38
ChIP density(Case|Control): 36459.78|6328.7455
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CCDC12 ;
ROSE Overlap CCDC12 ; NBEAL2 ;
ROSE Proximal PTH1R ; NRADDP ;
ROSE Closest CCDC12 ;
Lasso CCDC12 ; PTH1R ;
PreSTIGE ;
ABC ;
BETA MYL3 ; PTH1R ; NBEAL2 ; CCDC12 ; NRADDP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900196 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers