SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900071
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr1:156744012-156769520
Size: 25508
Super-enhancer rank 71
Number of SE elements: 6
ChIP density(Case|Control): 46024.0844|2341.6344
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HDGF ;
ROSE Overlap HDGF ; PRCC ;
ROSE Proximal SH2D2A ; CRABP2 ; NTRK1 ; RRNAD1 ; ISG20L2 ; MRPL24 ;
ROSE Closest HDGF ;
Lasso INSRR ; SH2D2A ; NES ; PRCC ; RRNAD1 ; CRABP2 ; HDGF ; PEAR1 ; NTRK1 ;
PreSTIGE ;
ABC ;
BETA RRNAD1 ; SH2D2A ; MRPL24 ; HDGF ; CRABP2 ; ISG20L2 ; NES ; NTRK1 ; PRCC ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900071 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers