SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_075600786
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Embryo
Biosample name: ES-derived progenitors_FG FOXA2 -/-
Genomic region: chr3:129113733-129124227
Size: 10494
Super-enhancer rank 786
Number of SE elements: 3
ChIP density(Case|Control): 15000.1236|738.7776
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RAB43 ;
ROSE Overlap RAB43 ; ISY1-RAB43 ;
ROSE Proximal ;
ROSE Closest RAB43 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ISY1 ; RAB43 ; ISY1-RAB43 ; CNBP ; GP9 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_075600786 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers