SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_075600709
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Embryo
Biosample name: ES-derived progenitors_FG FOXA2 -/-
Genomic region: chr3:122459340-122473524
Size: 14184
Super-enhancer rank 709
Number of SE elements: 4
ChIP density(Case|Control): 16599.5352|1331.8776
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KPNA1 ;
ROSE Overlap KPNA1 ;
ROSE Proximal LOC102723582 ; WDR5B ; KPNA1 ;
ROSE Closest KPNA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA WDR5B ; KPNA1 ; PARP9 ; FAM162A ; CCDC58 ; LOC102723582 ; DTX3L ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_075600709 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers