SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_075600264
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Embryo
Biosample name: ES-derived progenitors_FG FOXA2 -/-
Genomic region: chr3:51890255-51901692
Size: 11437
Super-enhancer rank 264
Number of SE elements: 3
ChIP density(Case|Control): 25932.2538|949.271
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IQCF1 ;
ROSE Overlap IQCF1 ;
ROSE Proximal PARP3 ; IQCF5 ; RRP9 ; IQCF5-AS1 ; IQCF2 ;
ROSE Closest IQCF1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GPR62 ; IQCF5 ; ABHD14B ; RPL29 ; ACY1 ; RRP9 ; PARP3 ; IQCF5-AS1 ; IQCF4 ; PCBP4 ; IQCF3 ; ABHD14A ; IQCF2 ; ABHD14A-ACY1 ; IQCF1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_075600264 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers