SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_075600032
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Embryo
Biosample name: ES-derived progenitors_FG FOXA2 -/-
Genomic region: chr21:8219727-8237693
Size: 17966
Super-enhancer rank 32
Number of SE elements: 4
ChIP density(Case|Control): 95007.8012|37189.62
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNA28S5 ;
ROSE Overlap RNA28S5 ; LOC100507412 ;
ROSE Proximal MIR6724-1 ; MIR3687-1 ; MIR3648-1 ; RNA5-8S5 ; RNA18S5 ;
ROSE Closest RNA28S5 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR6724-1 ; RNA28S5 ; MIR6724-2 ; MIR3648-1 ; RNA5-8S5 ; LOC100507412 ; MIR6724-3 ; MIR6724-4 ; MIR3648-2 ; MIR663A ; MIR3687-1 ; RNA18S5 ; MIR3687-2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_075600032 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers