SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074801042
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr5:177388355-177416356
Size: 28001
Super-enhancer rank 1042
Number of SE elements: 3
ChIP density(Case|Control): 35519.2685|4326.1545
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PFN3 ;
ROSE Overlap F12 ; SLC34A1 ; PFN3 ;
ROSE Proximal RGS14 ; PRR7 ; PRR7-AS1 ; LMAN2 ; GRK6 ;
ROSE Closest PFN3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PDLIM7 ; MXD3 ; RAB24 ; GRK6 ; PRELID1 ; SLC34A1 ; LMAN2 ; F12 ; PRR7-AS1 ; PRR7 ; DBN1 ; RGS14 ; PFN3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074801042 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers