SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074801029
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr1:28524133-28531194
Size: 7061
Super-enhancer rank 1029
Number of SE elements: 1
ChIP density(Case|Control): 32198.8661|611.4826
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RCC1 ;
ROSE Overlap RCC1 ;
ROSE Proximal SNORA44 ; SNORA73A ; SNORD99 ; SNORA61 ; SNHG3 ; TRNAU1AP ; SNORA73B ; SNORA16A ;
ROSE Closest RCC1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RCC1 ; PHACTR4 ; RAB42 ; SNHG3 ; SNORA16A ; SNHG12 ; SNORD99 ; TRNAU1AP ; SNORA61 ; SNORA73B ; SNORA44 ; SNORA73A ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074801029 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers