SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_074800869
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr1:44729516-44739751
Size: 10235
Super-enhancer rank 869
Number of SE elements: 2
ChIP density(Case|Control): 37383.3375|1615.083
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU5D-1 ;
ROSE Overlap RNU5D-1 ;
ROSE Proximal SNORD38A ; RPS8 ; KIF2C ; SNORD55 ; BEST4 ; SNORD46 ; RNU5F-1 ; SNORD38B ;
ROSE Closest RNU5D-1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SNORD55 ; TMEM53 ; KIF2C ; RNU5D-1 ; C1orf228 ; SNORD46 ; SNORD38B ; SNORD38A ; RNU5F-1 ; BEST4 ; BTBD19 ; TCTEX1D4 ; RPS8 ; PLK3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800869 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers