SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800805
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr17:28724196-28730252
Size: 6056
Super-enhancer rank 805
Number of SE elements: 1
ChIP density(Case|Control): 38044.3976|528.6888
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TLCD1 ;
ROSE Overlap RPL23A ; NEK8 ; TLCD1 ;
ROSE Proximal SNORD4B ; RAB34 ; PROCA1 ; SNORD42A ; SNORD4A ; SNORD42B ; TRAF4 ;
ROSE Closest TLCD1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PROCA1 ; TRAF4 ; SNORD42A ; KIAA0100 ; NEK8 ; RAB34 ; SNORD4B ; SNORD4A ; FAM222B ; SDF2 ; RPL23A ; SNORD42B ; TLCD1 ; NARR ; SUPT6H ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800805 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers