SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800637
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr1:161082038-161090439
Size: 8401
Super-enhancer rank 637
Number of SE elements: 2
ChIP density(Case|Control): 45709.0009|1633.1544
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PVRL4 ;
ROSE Overlap PVRL4 ;
ROSE Proximal DEDD ; KLHDC9 ; ARHGAP30 ; USF1 ; NIT1 ; TSTD1 ; PFDN2 ;
ROSE Closest PVRL4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA USP21 ; USF1 ; NIT1 ; DEDD ; UFC1 ; PPOX ; TSTD1 ; PVRL4 ; F11R ; ARHGAP30 ; KLHDC9 ; B4GALT3 ; PFDN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800637 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers