SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800502
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr19:39431004-39446529
Size: 15525
Super-enhancer rank 502
Number of SE elements: 3
ChIP density(Case|Control): 55621.4175|3890.565
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS16 ;
ROSE Overlap RPS16 ; SUPT5H ;
ROSE Proximal TIMM50 ; ZFP36 ; PLEKHG2 ; MED29 ; PAF1 ; MIR4530 ;
ROSE Closest RPS16 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ZFP36 ; SUPT5H ; PAF1 ; TIMM50 ; RPS16 ; SELV ; SAMD4B ; MIR4530 ; MED29 ; EID2B ; DLL3 ; PLEKHG2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800502 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers