SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800399
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr9:128135072-128152829
Size: 17757
Super-enhancer rank 399
Number of SE elements: 4
ChIP density(Case|Control): 62257.8177|2761.2135
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LCN2 ;
ROSE Overlap LCN2 ;
ROSE Proximal PTGES2-AS1 ; SLC25A25 ; C9orf16 ; SLC25A25-AS1 ; CIZ1 ; PTGES2 ;
ROSE Closest LCN2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PTGES2 ; NAIF1 ; SLC25A25 ; CIZ1 ; C9orf16 ; DNM1 ; SLC25A25-AS1 ; LCN2 ; PTGES2-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800399 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers