SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800384
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr12:120179932-120201164
Size: 21232
Super-enhancer rank 384
Number of SE elements: 4
ChIP density(Case|Control): 63122.736|2263.3312
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GCN1 ;
ROSE Overlap RPLP0 ; GCN1 ;
ROSE Proximal PXN-AS1 ; PXN ; MIR4498 ;
ROSE Closest GCN1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PXN-AS1 ; MIR4498 ; GCN1L1 ; RPLP0 ; PXN ; RAB35 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800384 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers