SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800258
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr19:39128638-39168627
Size: 39989
Super-enhancer rank 258
Number of SE elements: 16
ChIP density(Case|Control): 88243.7263|10529.1037
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PAK4 ;
ROSE Overlap PAK4 ;
ROSE Proximal PAPL ; SYCN ; PAK4 ; NCCRP1 ;
ROSE Closest PAK4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PAK4 ; IFNL3 ; SYCN ; NCCRP1 ; PAPL ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800258 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers