SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800223
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr1:148423035-148461220
Size: 38185
Super-enhancer rank 223
Number of SE elements: 11
ChIP density(Case|Control): 89990.5895|6262.34
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC01138 ;
ROSE Overlap LOC100132057 ; LINC01138 ;
ROSE Proximal LINC01138 ; PPIAL4G ; MIR6077 ; RNVU1-3 ; RNU1-13P ;
ROSE Closest LINC01138 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RNVU1-10 ; MIR6077 ; RNVU1-3 ; LINC01138 ; PPIAL4G ; LOC100132057 ; RNU1-13P ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800223 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers