SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_074800130
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr19:39397920-39412321
Size: 14401
Super-enhancer rank 130
Number of SE elements: 4
ChIP density(Case|Control): 110536.3156|3498.0029
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ZFP36 ;
ROSE Overlap ZFP36 ; MIR4530 ; MED29 ;
ROSE Proximal PLEKHG2 ; SUPT5H ; RPS16 ; PAF1 ;
ROSE Closest ZFP36 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ZFP36 ; GMFG ; SUPT5H ; PAF1 ; TIMM50 ; RPS16 ; SAMD4B ; MIR4530 ; MED29 ; DLL3 ; LRFN1 ; PLEKHG2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800130 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers