SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800010
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr19:12983215-13094541
Size: 111326
Super-enhancer rank 10
Number of SE elements: 24
ChIP density(Case|Control): 340201.1234|16075.4744
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NFIX ;
ROSE Overlap NFIX ;
ROSE Proximal FARSA ; DAND5 ; MIR6515 ; RAD23A ; GADD45GIP1 ; CALR ; LYL1 ; TRMT1 ; NACC1 ;
ROSE Closest NFIX ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TRMT1 ; GADD45GIP1 ; NFIX ; DAND5 ; RAD23A ; LYL1 ; MIR6515 ; NACC1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800010 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers