SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074000290
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Muscle
Biosample name: RH3
Genomic region: chr12:54354769-54396639
Size: 41870
Super-enhancer rank 290
Number of SE elements: 9
ChIP density(Case|Control): 52023.475|3517.08
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ZNF385A ;
ROSE Overlap ZNF385A ; LOC102724050 ; GPR84 ; ITGA5 ;
ROSE Proximal COPZ1 ; LOC102724050 ; MIR148B ;
ROSE Closest ZNF385A ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ITGA5 ; COPZ1 ; ZNF385A ; NFE2 ; GTSF1 ; LOC102724050 ; HNRNPA1 ; CBX5 ; MIR148B ; GPR84 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074000290 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers