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Super-enhancer overview

SE ID: SE_02_072200322
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Pancreas
Biosample name: PATU8988S_TP63dN_DOX
Genomic region: chr3:8479642-8504719
Size: 25077
Super-enhancer rank 322
Number of SE elements: 7
ChIP density(Case|Control): 21134.8956|3959.6583
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LMCD1-AS1 ;
ROSE Overlap LMCD1 ; LMCD1-AS1 ;
ROSE Proximal LMCD1 ;
ROSE Closest LMCD1-AS1 ;
Lasso ;
PreSTIGE ;
ABC LMCD1-AS1 ; LMCD1 ; RAD18 ; SRGAP3 ; GRM7 ;
BETA LMCD1-AS1 ; LMCD1 ; LINC00312 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_072200322 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers