SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_072200230
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Pancreas
Biosample name: PATU8988S_TP63dN_DOX
Genomic region: chr19:1017610-1031103
Size: 13493
Super-enhancer rank 230
Number of SE elements: 4
ChIP density(Case|Control): 22328.2164|1629.9544
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CNN2 ;
ROSE Overlap TMEM259 ; RNU6-1 ; RNU6-9 ; CNN2 ;
ROSE Proximal HMHA1 ; ABCA7 ; GRIN3B ; TMEM259 ; WDR18 ;
ROSE Closest CNN2 ;
Lasso ;
PreSTIGE ;
ABC CNN2 ; TMEM259 ; WDR18 ; GPX4 ; POLR2E ; ARHGAP45 ; ABCA7 ;
BETA GPX4 ; RNU6-7 ; CNN2 ; HMHA1 ; RNU6-9 ; ARID3A ; RNU6-1 ; ABCA7 ; GRIN3B ; WDR18 ; TMEM259 ; RNU6-8 ; POLR2E ; RNU6-2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_072200230 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers