SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_071200348
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Pancreas
Biosample name: BxPC3_sgNEG
Genomic region: chr19:39430175-39448850
Size: 18675
Super-enhancer rank 348
Number of SE elements: 3
ChIP density(Case|Control): 28124.55|3527.7075
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS16 ;
ROSE Overlap RPS16 ; SUPT5H ;
ROSE Proximal TIMM50 ; ZFP36 ; PLEKHG2 ; MED29 ; PAF1 ; MIR4530 ;
ROSE Closest RPS16 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ZFP36 ; SUPT5H ; PAF1 ; TIMM50 ; RPS16 ; SELV ; SAMD4B ; MIR4530 ; MED29 ; EID2B ; DLL3 ; PLEKHG2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_071200348 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers