SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_060400003
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_scrshRNA_DMSO
Genomic region: chr1:201253579-201320002
Size: 66423
Super-enhancer rank 3
Number of SE elements: 10
ChIP density(Case|Control): 206276.6265|18551.9439
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PKP1;
ROSE Overlap PKP1;
ROSE Proximal PKP1;
ROSE Closest PKP1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060400003 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers