SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200706
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr22:31235428-31255501
Size: 20073
Super-enhancer rank 706
Number of SE elements: 5
ChIP density(Case|Control): 22016.0664|3031.023
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LIMK2 ;
ROSE Overlap LIMK2 ;
ROSE Proximal PIK3IP1 ;
ROSE Closest LIMK2 ;
Lasso ;
PreSTIGE ;
ABC OSBP2 ; TCN2 ; MORC2 ; SLC35E4 ; INPP5J ; PLA2G3 ; SMTN ; TUG1 ; DUSP18 ;
BETA RNF185 ; LIMK2 ; PIK3IP1 ; MIR3928 ; PIK3IP1-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200706 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers