SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200635
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr13:25304549-25320990
Size: 16441
Super-enhancer rank 635
Number of SE elements: 4
ChIP density(Case|Control): 22629.3924|2411.8947
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NUP58 ;
ROSE Overlap NUP58 ;
ROSE Proximal MTMR6 ; NUP58 ;
ROSE Closest NUP58 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA NUPL1 ; MTMR6 ; ATP8A2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200635 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers