SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200580
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr11:116807444-116811445
Size: 4001
Super-enhancer rank 580
Number of SE elements: 2
ChIP density(Case|Control): 22590.0461|1101.0752
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APOA4 ;
ROSE Overlap ;
ROSE Proximal APOC3 ; APOA1-AS ; APOA1 ; BUD13 ; ZPR1 ; APOA5 ; APOA4 ;
ROSE Closest APOA4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA APOA1-AS ; BUD13 ; APOA1 ; APOA4 ; APOC3 ; ZPR1 ; APOA5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200580 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers