SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200549
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr7:5549059-5558906
Size: 9847
Super-enhancer rank 549
Number of SE elements: 5
ChIP density(Case|Control): 25828.681|3679.8239
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ACTB ;
ROSE Overlap ;
ROSE Proximal FSCN1 ; FBXL18 ; LOC221946 ; ACTB ;
ROSE Closest ACTB ;
Lasso ACTB ; FSCN1 ; FBXL18 ;
PreSTIGE ;
ABC FBXL18 ; LOC221946 ;
BETA MIR589 ; FBXL18 ; FSCN1 ; ACTB ; LOC221946 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200549 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers