SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200544
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr6:17863236-17878456
Size: 15220
Super-enhancer rank 544
Number of SE elements: 2
ChIP density(Case|Control): 23915.186|1654.414
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KIF13A ;
ROSE Overlap KIF13A ;
ROSE Proximal ;
ROSE Closest KIF13A ;
Lasso ;
PreSTIGE ;
ABC TPMT ; KIF13A ; NUP153 ; LOC105374952 ; FAM8A1 ; CAP2 ; KDM1B ; RNF144B ; DEK ; LOC101928491 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200544 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers