SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200436
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr1:201456616-201490273
Size: 33657
Super-enhancer rank 436
Number of SE elements: 12
ChIP density(Case|Control): 37167.4251|12352.119
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PHLDA3 ;
ROSE Overlap CSRP1 ; PHLDA3 ;
ROSE Proximal TNNI1 ; CSRP1 ; RPS10P7 ;
ROSE Closest PHLDA3 ;
Lasso ;
PreSTIGE ;
ABC TNNI1 ; CSRP1 ; PHLDA3 ;
BETA TNNI1 ; PHLDA3 ; CSRP1 ; LAD1 ; TNNT2 ; RPS10P7 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200436 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers