SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200433
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr21:34794877-34815411
Size: 20534
Super-enhancer rank 433
Number of SE elements: 5
ChIP density(Case|Control): 28170.5946|3318.2944
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC01426 ;
ROSE Overlap RUNX1 ;
ROSE Proximal LINC01426 ;
ROSE Closest LINC01426 ;
Lasso ;
PreSTIGE ;
ABC DNAJC28 ; IL10RB-AS1 ; IFNAR2 ; IFNGR2 ; IFNAR1 ; IL10RB ; TMEM50B ;
BETA LINC01426 ; RUNX1 ; LINC00160 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200433 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers