SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200388
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr3:136951896-136963254
Size: 11358
Super-enhancer rank 388
Number of SE elements: 4
ChIP density(Case|Control): 27681.7176|1525.3794
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IL20RB ;
ROSE Overlap IL20RB ;
ROSE Proximal NCK1 ;
ROSE Closest IL20RB ;
Lasso ;
PreSTIGE ;
ABC ;
BETA NCK1-AS1 ; NCK1 ; IL20RB ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200388 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers