SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200324
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr1:26848702-26878046
Size: 29344
Super-enhancer rank 324
Number of SE elements: 6
ChIP density(Case|Control): 34620.0512|5980.3072
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SFN ;
ROSE Overlap ZDHHC18 ; SFN ;
ROSE Proximal GPATCH3 ; NUDC ; GPN2 ; NR0B2 ;
ROSE Closest SFN ;
Lasso SFN ; NUDC ; GPN2 ; NR0B2 ; GPATCH3 ; ZDHHC18 ;
PreSTIGE ;
ABC RPS6KA1 ;
BETA KDF1 ; GPATCH3 ; SFN ; ZDHHC18 ; PIGV ; NR0B2 ; NUDC ; GPN2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200324 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers