SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200321
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr19:45401442-45407243
Size: 5801
Super-enhancer rank 321
Number of SE elements: 1
ChIP density(Case|Control): 31414.1553|2722.9894
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PPP1R13L ;
ROSE Overlap CD3EAP ; PPP1R13L ;
ROSE Proximal CD3EAP ; ERCC1 ; ERCC2 ; MIR6088 ;
ROSE Closest PPP1R13L ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ERCC1 ; KLC3 ; PPP1R13L ; MIR6088 ; FOSB ; CKM ; CD3EAP ; PPM1N ; RTN2 ; ERCC2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200321 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers