SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200318
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr17:28806607-28812496
Size: 5889
Super-enhancer rank 318
Number of SE elements: 1
ChIP density(Case|Control): 29770.6617|970.5072
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: FAM222B ;
ROSE Overlap FAM222B ;
ROSE Proximal ERAL1 ; MIR451A ; MIR144 ; FAM222B ; MIR451B ; MIR4732 ;
ROSE Closest FAM222B ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PROCA1 ; TRAF4 ; SNORD42A ; MIR451A ; NEK8 ; RAB34 ; FAM222B ; MIR4732 ; SNORD4B ; SNORD4A ; DHRS13 ; RPL23A ; SNORD42B ; TLCD1 ; FLOT2 ; ERAL1 ; NARR ; MIR451B ; MIR144 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200318 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers