SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200312
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr3:44882809-44893925
Size: 11116
Super-enhancer rank 312
Number of SE elements: 2
ChIP density(Case|Control): 31161.4828|2238.7624
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TMEM42 ;
ROSE Overlap TGM4 ;
ROSE Proximal TMEM42 ; MIR564 ;
ROSE Closest TGM4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TGM4 ; ZDHHC3 ; EXOSC7 ; MIR564 ; TMEM42 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200312 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers