SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200290
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr18:3592921-3606724
Size: 13803
Super-enhancer rank 290
Number of SE elements: 2
ChIP density(Case|Control): 31920.8178|2044.2243
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: DLGAP1-AS2 ;
ROSE Overlap DLGAP1 ; DLGAP1-AS2 ; DLGAP1-AS1 ;
ROSE Proximal ;
ROSE Closest DLGAP1-AS2 ;
Lasso ;
PreSTIGE ;
ABC DLGAP1-AS1 ; DLGAP1-AS2 ; GAPLINC ; MYL12B ; LOC104968399 ; TGIF1 ; LPIN2 ; MYL12A ;
BETA DLGAP1-AS2 ; DLGAP1-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200290 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers