SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200261
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr5:141557012-141565277
Size: 8265
Super-enhancer rank 261
Number of SE elements: 4
ChIP density(Case|Control): 32721.9615|1611.675
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100505658 ;
ROSE Overlap LOC100505658 ; DIAPH1 ;
ROSE Proximal ;
ROSE Closest LOC100505658 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA DIAPH1 ; PCDHGC4 ; PCDHGC3 ; RELL2 ; HDAC3 ; LOC100505658 ; PCDHGC5 ; FCHSD1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200261 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers