SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200092
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr11:65417958-65429362
Size: 11404
Super-enhancer rank 92
Number of SE elements: 3
ChIP density(Case|Control): 54511.12|3966.3112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NEAT1 ;
ROSE Overlap NEAT1 ;
ROSE Proximal SLC25A45 ; FRMD8 ; MIR612 ;
ROSE Closest NEAT1 ;
Lasso SLC25A45 ; CDC42EP2 ; SCYL1 ; FRMD8 ; TIGD3 ;
PreSTIGE ;
ABC RELA ; SIPA1 ;
BETA SLC25A45 ; FRMD8 ; DPF2 ; MIR612 ; MALAT1 ; NEAT1 ; TIGD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200092 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers