SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200090
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr2:173109175-173161918
Size: 52743
Super-enhancer rank 90
Number of SE elements: 12
ChIP density(Case|Control): 57268.3494|6213.1254
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ZAK ;
ROSE Overlap ZAK ;
ROSE Proximal ;
ROSE Closest ZAK ;
Lasso ;
PreSTIGE ;
ABC ITGA6 ; GAD1 ; TLK1 ; CYBRD1 ; METAP1D ; HAT1 ; DLX1 ; DLX2 ; DLX2-AS1 ; PDK1 ; RAPGEF4 ; DYNC1I2 ; SLC25A12 ;
BETA ZAK ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200090 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers