SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200089
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr19:43738999-43785804
Size: 46805
Super-enhancer rank 89
Number of SE elements: 10
ChIP density(Case|Control): 63743.7295|12496.935
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SMG9 ;
ROSE Overlap SMG9 ; KCNN4 ;
ROSE Proximal LYPD5 ; ZNF283 ; IRGC ;
ROSE Closest SMG9 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PLAUR ; SMG9 ; ZNF283 ; IRGC ; KCNN4 ; LYPD5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200089 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers