SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200066
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr19:1154568-1194963
Size: 40395
Super-enhancer rank 66
Number of SE elements: 11
ChIP density(Case|Control): 68994.66|12057.9075
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SBNO2 ;
ROSE Overlap SBNO2 ;
ROSE Proximal SBNO2 ; ATP5D ; STK11 ; CBARP ; GPX4 ;
ROSE Closest SBNO2 ;
Lasso ;
PreSTIGE ;
ABC SBNO2 ; STK11 ; ARHGAP45 ; POLR2E ; GPX4 ; TMEM259 ; ABCA7 ; PLPP2 ; PRTN3 ; CFD ; ARID3A ; MUM1 ; ATP5D ; CBARP ; WDR18 ; CNN2 ;
BETA GPX4 ; C19orf26 ; CIRBP ; HMHA1 ; ATP5D ; CIRBP-AS1 ; POLR2E ; STK11 ; SBNO2 ; MIDN ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200066 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers