SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200062
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr6:12280209-12329909
Size: 49700
Super-enhancer rank 62
Number of SE elements: 8
ChIP density(Case|Control): 63904.26|6590.22
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: EDN1 ;
ROSE Overlap EDN1 ;
ROSE Proximal ;
ROSE Closest EDN1 ;
Lasso ;
PreSTIGE ;
ABC EDN1 ; SMIM13 ; TBC1D7-LOC100130357 ; TMEM14C ; TBC1D7 ; PAK1IP1 ; C6orf52 ; NEDD9 ; GCNT2 ; GFOD1 ; HIVEP1 ; NOL7 ; RANBP9 ; LOC101928253 ; CD83 ; MCUR1 ; RNF182 ;
BETA EDN1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200062 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers