SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200058
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr11:65471681-65508910
Size: 37229
Super-enhancer rank 58
Number of SE elements: 11
ChIP density(Case|Control): 68170.0219|9791.227
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MALAT1 ;
ROSE Overlap MALAT1 ;
ROSE Proximal SCYL1 ; LTBP3 ; NEAT1 ; MIR612 ;
ROSE Closest MALAT1 ;
Lasso SLC25A45 ; EHBP1L1 ; LTBP3 ; CAPN1 ; RELA ; DPF2 ; SSSCA1 ; SIPA1 ; CDC42EP2 ; SCYL1 ; FRMD8 ; PCNXL3 ; KCNK7 ; AP5B1 ; FAM89B ;
PreSTIGE ;
ABC KAT5 ;
BETA LTBP3 ; SCYL1 ; MIR612 ; SSSCA1 ; FAM89B ; MALAT1 ; NEAT1 ; SSSCA1-AS1 ; EHBP1L1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200058 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers