SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060200043
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr13:45161914-45220875
Size: 58961
Super-enhancer rank 43
Number of SE elements: 11
ChIP density(Case|Control): 74786.1324|9445.5522
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KCTD4 ;
ROSE Overlap KCTD4 ; GTF2F2 ;
ROSE Proximal RNU6-69P ;
ROSE Closest KCTD4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GTF2F2 ; KCTD4 ; RNU6-69P ; LOC101929259 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200043 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers