SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200036
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr4:41118993-41162801
Size: 43808
Super-enhancer rank 36
Number of SE elements: 6
ChIP density(Case|Control): 73939.1424|5931.6032
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APBB2 ;
ROSE Overlap APBB2 ;
ROSE Proximal ;
ROSE Closest APBB2 ;
Lasso ;
PreSTIGE ;
ABC APBB2 ; SLC30A9 ; LIMCH1 ; LINC00682 ;
BETA APBB2 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200036 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers