SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_060200022
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p63shRNA_DMSO
Genomic region: chr3:190302067-190387356
Size: 85289
Super-enhancer rank 22
Number of SE elements: 20
ChIP density(Case|Control): 88726.1467|10157.9199
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CLDN1 ;
ROSE Overlap CLDN1 ;
ROSE Proximal CLDN16 ;
ROSE Closest CLDN1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA CLDN1 ; CLDN16 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060200022 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers