SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_060100254
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: MCF10A_p53shRNA_Nutlin3A
Genomic region: chr3:48428082-48435041
Size: 6959
Super-enhancer rank 254
Number of SE elements: 1
ChIP density(Case|Control): 20499.1263|1519.1497
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PLXNB1;
ROSE Overlap PLXNB1; CCDC51;
ROSE Proximal TMA7; ATRIP; CCDC51; SHISA5; TREX1;
ROSE Closest PLXNB1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_060100254 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers