SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_058900517
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Cervix
Biosample name: HeLa Kyoto_Luci siRNA
Genomic region: chr1:108813821-108831958
Size: 18137
Super-enhancer rank 517
Number of SE elements: 10
ChIP density(Case|Control): 13669.8569|1975.1193
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: AKNAD1 ;
ROSE Overlap AKNAD1 ;
ROSE Proximal SPATA42 ; GPSM2 ;
ROSE Closest AKNAD1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GPSM2 ; SPATA42 ; STXBP3 ; AKNAD1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_058900517 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers