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Super-enhancer overview

SE ID: SE_02_058600169
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Chordal
Biosample name: patient-derived chordoma MGH_4
Genomic region: chr12:6530854-6558500
Size: 27646
Super-enhancer rank 169
Number of SE elements: 5
ChIP density(Case|Control): 41435.8248|4138.6062
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: GAPDH;
ROSE Overlap NCAPD2; GAPDH; NOP2; IFFO1;
ROSE Proximal CHD4; GAPDH; MRPL51; SCARNA11; NOP2; SCARNA10;
ROSE Closest GAPDH;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_058600169 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers