SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_054500897
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone marrow
Biosample name: K562 WT
Genomic region: chr3:12983870-13013143
Size: 29273
Super-enhancer rank 897
Number of SE elements: 10
ChIP density(Case|Control): 35379.3478|4174.3298
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IQSEC1 ;
ROSE Overlap IQSEC1 ;
ROSE Proximal IQSEC1 ;
ROSE Closest IQSEC1 ;
Lasso ;
PreSTIGE ;
ABC SYN2 ; TIMP4 ; TMEM40 ; NUP210 ; IQSEC1 ; RPL32 ; CAND2 ; LINC02022 ;
BETA IQSEC1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_054500897 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers